The image analysis field guide#
Essential toolkit to get started in scientific image analysis.
Welcome! Use this field guide to quickly find the information you need to tackle your scientific image analysis challenges.
π Getting started#
These are our favourite resources for learning the basics of image analysis:
![](https://biapol.github.io/Image-data-science-with-Python-and-Napari-EPFL2022/_static/biapol_logo.png)
Image data science with Python and Napari @EPFL
![](https://pbs.twimg.com/profile_images/958000343970992129/UbfSyOtp_400x400.jpg)
Image Processing and Analysis for Life Scientists
![](https://bioimagebook.github.io/_static/book-logo-smaller.png)
Introduction to Bioimage Analysis
Hereβs a short list of image analysis software that we recommend:
Fiji
![](_images/ilastik_square.jpeg)
Ilastik
Napari
![](https://chanzuckerberg.com/wp-content/uploads/2019/11/QuPath_logo-Pete-Bankhead.png)
QuPath
Read our setup guide:
![](https://i0.wp.com/www.inferencelab.com/wp-content/uploads/Python-logo-notext.svg_.png)
π Explore topics#
Delve deeper into individual topics.
![](_images/segmentation_tm.jpeg)
Image segmentation
![](_images/registration_tm.jpeg)
Image registration
![](_images/denoising_tm.jpeg)
Image denoising
![](_images/tracking_tm.jpeg)
Object detection and tracking
![](_images/visualization_tm.jpeg)
Image data visualization
![](_images/performance_tm.jpeg)
Performance optimization
π‘ Example projects#
Browse our collection of example image analysis projects done in collaboration with EPFL labs and presented as Jupyter notebooks.
π§βπ€βπ§ Join the community#
If you are in EPFL, you can join our Matrix server by connecting to element.epfl.ch.
![](https://raw.githubusercontent.com/Tarikul-Islam-Anik/Animated-Fluent-Emojis/master/Emojis/Objects/Microscope.png)
Read our guide to find out how you can contribute to our project.
![](https://raw.githubusercontent.com/Tarikul-Islam-Anik/Animated-Fluent-Emojis/master/Emojis/Objects/Black%20Nib.png)
Please fill-in our feedback form. Weβd love to hear your opinion about our site!
![](https://global.discourse-cdn.com/business4/uploads/imagej/original/2X/4/4904e8fe196486eabdbe0d9d185e94dfcab74e10.png)
Our favourite online forum on image analysis.