Laboratory of Systems Biology and Genetics

Bart Deplancke

Lab Recent Projects

Lab Open Positions

Imaging Labs 2

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Environmental Microbiology Laboratory

Prof. Rizlan Bernier-Latmani

Earthquake Engineering and Structural Dynamics Laboratory

Prof. Katrin Beyer

3D X-Ray tomography seismic behaviour structure dynamics crack detection stereo vision DIC

Laboratory for Nanomaterials Characterisation with Electrons

Prof. Vasiliki Tileli

segmentation nanomaterials tracking of bubbles TEM

Laboratory of Cognitive Neuroscience

Prof. Olaf Blanke

MRI fMRI virtual reality multisensory processing body perception

Laboratory of Behavioral Genetics

Prof. Carmen Sandi

MRI fMRI EEG 1H-MRS

Persat Lab

Prof. Alexandre Persat

confocal imaging mechanomicrobiology interferometric scattering

Geographic Information Systems Laboratory

Prof. François Golay

ML tools remote sensing LiDAR spatial analysis geovisualization pattern analysis

Digital Humanities Chair

Prof. Frederic Kaplan

ML tools digital humanities semantic segmentation historical images content mining document segmentation

Signal Processing Laboratory 4

Prof. Pascal Frossard

ML tools ML theory image analysis digital pathology robustness of neural networks graph signal processing

De Palma Lab

Prof. Michele de Palma

tumor environment micro-CT images tumor segmentation

Laboratory of Integrated Comfort Engineering

Prof. Dolaana Khovalyg

energy management thermal infrared imaging temperature extraction

Laboratory of Microbiology and Microtechnology

Prof. John McKinney

fluorescence microscopy bacterial mechanics

Flexible Structures Laboratory

Prof. Pedro Reis

3D X-Ray tomography micro-CT scans solid mechanics flexible structures

Lemaître Lab

Prof. Bruno Lemaître

Laboratory for Fundamental BioPhotonics

Prof. Sylvie Roke

label-free imaging nonlinear light scattering water characterization 2-photon imaging

Swiss Plasma Center

Prof. Ambrogio Fasoli

plasma physics tomographic inversion thermonuclear fusion

Laboratory of Quantum and Nano-Optics

Prof. Christophe Galland

Medtronic Chair in Neuroengineering

Prof. Diego Ghezzi

neural implants retinal prosthesis artificial vision

Integrated Circuits Laboratory

Prof. Christian Enz

CMOS image sensors integrated circuits

Laboratory of Fluid Mechanics and Instabilities

Prof. François Gallaire

Laboratory for Ultrafast Microscopy and Electron Scattering

Prof. Fabrizio Carbone

TEM cryo-Lorentz microscopy femtosecond laser pulses ultrafast imaging

Neural Microcircuitry Laboratory

Prof. Henry Markram

neuroimaging single cell reconstruction voltage-sensitive dyes imaging

Adaptive Systems Laboratory

Prof. Ali Sayed

ML tools ML theory distributed processing decentralized learning functional connectivity hyperspectral images

Laboratory of Molecular Microbiology

Prof. Melanie Blokesch

fluorescence microscopy bacterial regulatory networks phase contrast imaging

Computational X-ray Imaging Laboratory

Prof. Manuel Guizar Sicairos

coherent lensless imaging phase retrieval ptychography tomography X-ray imaging

Geometric Computing Laboratory

Prof. Mark Pauly

Composite Construction Laboratory

Prof. Anastasios Vassilopoulos

advanced composite materials fractography analysis DIC

Laboratory for Information and Inference Systems

Prof. Volkan Cevher

Engineering Mechanics of Soft lnterfaces

Prof. John Martin Kolinski

high-speed imaging particle tracking soft matter interface fluid mechanics interferometry virtual frame technique FTIR

Neuroengineering Laboratory

Prof. Pavan Ramdya

image analysis drosophilia locomotion 2-photon microscopy neural activity imaging computational models limb tracking ML tools

Constam Lab-Developmental and Cancer Cell Biology

Prof. Daniel Constam

Image and Visual Representation Laboratory

Prof. Sabine Süsstrunk

Photonic Systems Laboratory

Prof. Camille Brès

Geodetic Engineering Laboratory

Prof. Bertrand Merminod

image reconstruction remote sensing depth estimation UAV drone mapping position determination

Chair of Statistical Data Science

Prof. Sofia Olhede

ML theory mathematical imaging spatial point patterns earth observation

Laboratory of Synaptic Mechanisms

Prof. Ralf Schneggenburger

Environmental Computational Science and Earth Observation Laboratory

Prof. Devis Tuia

ML tools semantic segmentation remote sensing pattern extraction image interpretability wildlife conservation urban studies

Suter Lab

Prof. David Suter

fluorescence microscopy cellular biology gene regulation cell identity

Learning Algorithms and Systems Laboratory

Prof. Aude Billard

Laboratory of Innate Immunity

Prof. Andrea Ablasser

cryo-EM immune response DNA sensing confocal imaging

Gönczy Lab

Prof. Pierre Gönczy

developmental biology expansion microscopy fluoresence microscopy

Laboratory of Optics

Prof. Demetri Psaltis

label-free imaging ML tools holography optical diffraction tomography cochlear imaging multimode optical fibers

Electron Spectrometry and Microscopy Laboratory

Prof. Cécile Hébert

ML tools SEM HAADF STEM

Laboratory of Photonic Materials and Fibre Devices

Prof. Fabien Sorin

Biological Electron Microscopy Facility

Prof. Graham Knott

Laboratory of Biophysical Chemistry of Macromolecules

Prof. Beat Fierz

Laboratory of Astrophysics

Prof. Jean-Paul Kneib

Laboratory of Soil Mechanics

Prof. Lyesse Laloui

3D X-Ray tomography micro-CT scans crack detection soil mechanics

Laboratory of Systems Biology and Genetics

Prof. Bart Deplancke

genome organization systems biology spinning disk confocal microscopy

Computational Solid Mechanics Laboratory

Prof. Jean-Francois Molinari

numerical modelling friction and fracture ultrahigh-speed photography optical profilometer SEM DIC

Laboratory of Intelligent Systems

Prof. Dario Floreano

Computer Vision Lab

Prof. Pascal Fua

ML tools ML theory image analysis detection in cryo-EM human tracking features extraction

Signal Processing Laboratory 2

Prof. Pierre Vandergheynst

Chair of Mathematical Data Science

Prof. Emmanuel Abbe

ML tools ML theory information theory

Computational Neuroscience and AI

Prof. Alexander Mathis

ML tools ML theory image analysis animal tracking object recognition pose estimation

Brisken Lab

Prof. Cathrin Brisken

fluorescence microscopy breast cancer digital pathology

Laboratory for Biomolecular Modeling

Prof. Matteo Dal Peraro

cryo-EM integrative structural biology molecular modelling

Laboratory of Biological Electron Microscopy

Prof. Henning Stahlberg

neurodegenerative diseases sample preparation cryo-EM data collection

Medical Image Processing Lab

Prof. Dimitri Van de Ville

fMRI ML tools image processing mathematical imaging

Plant Ecology Research Laboratory

Prof. Charlotte Grossiord

plant ecology 3D X-Ray tomography micro-CT scans segmentation of plant roots

Laboratory of Experimental Biophysics

Prof. Suliana Manley

smart microscopy molecule tracking proteins dynamics PAINT imaging super-resolution microscopy SMLM

Gaznat Chair on GeoEnergy

Prof. Brice Lecampion

acoustic imaging geomaterials fracture propagation inverse problems

Laboratory of Functional and Metabolic Imaging

Prof. Rolf Gruetter

MRI in-vivo neurochemistry multinuclear spin physics metabolic imaging MR spectroscopy

Weigert Group

Prof. Martin Weigert

ML tools image analysis digital pathology nuclei segmentation

Visual lntelligence for Transportation

Prof. Alexandre Alahi

ML tools intelligent transport depth estimation autonomous navigation motion forecasting

Bionanophotonic Systems Laboratory

Prof. Hatice Altug

optical biosensors biomarkers cancer diagnostics low-cost sensing devices single-wavelength imaging nanophotonics

Machine Learning and Optimization Laboratory

Prof. Martin Jaggi

Laboratory for Bio- and Nano-Instrumentation

Prof. Georg Fantner

super-resolution microscopy open hardware nanoscale biology high-speed imaging nanoprobes MEMS AFM STM

Laboratory of Psychophysics

Prof. Michael Herzog

electrical neuroimaging MEG EEG visual information processing

Laboratory of Nanoscience for Energy Technologies

Prof. Giulia Tagliabue

Environmental Remote Sensing Laboratory

Prof. Alexis Berne

ML tools remote sensing precipitation dynamics 3D snowflake structure

Biomedical Imaging Group

Prof. Michael Unser

MRI ML tools ML theory super-resolution microscopy image processing cryo-EM optical imaging image reconstruction mathematical imaging

Laboratory of Neural Genetics and Disease

Prof. Brian McCabe

neurodegenerative diseases smart microscopy motor neuroscience automated lightsheet microscopy functional imaging infrared imaging CLEM

Laboratory of Digital Epidemiology

Prof. Marcel Salathé

ML tools network epidemiology food recognition contact tracing

Multimedia Signal Processing Group

Prof. Touradj Ebrahimi

Laboratory of Sensory Processing

Prof. Carl Petersen

2-photon microscopy neural activity imaging synaptic activity calcium imaging

Hummel Lab

Prof. Friedhelm Hummel

fMRI EEG cognitive rehabilitation DTI transcranial magnetic stimulation

Audiovisual Communications Laboratory

Prof. Martin Vetterli

image processing mathematical imaging source localization interferometric imaging acoustic imaging

Laboratory of Biomaterials for Immunoengineering

Prof. Li Tang

Immersive Interaction Group

Prof. Ronan Boulic

Segmentation Timing and Dynamics Laboratory

Prof. Andrew Oates

developmental biology smart microscopy open hardware light-sheet microscopy oscillatory dynamics

Laboratory for Experimental Museology

Prof. Sarah Kenderdine

virtual reality digital humanities interactive scientific visualization media naviguation

Visual Intelligence and Learning Lab

Prof. Amir Zamir

Extreme Environments Research Laboratory

Prof. Julia Schmale

Laboratory of Molecular Neurobiology

Prof. Hilal Lashuel

label-free imaging protein aggregation neurodegenerative diseases cryo-EM CLEM

Laboratory of Adaptative Motor Control

Prof. Mackenzie Mathis

ML tools ML theory image analysis animal tracking object recognition pose estimation system neuroscience smart microscopy adaptative behaviour

Laboratory of Applied Photonics Devices

Prof. Christophe Moser

ML tools photonics devices optical phase imaging retinal imaging multimode optical fiber imaging digital optics

TCV – Tokamac Physics

Prof. Christian Theiler

plasma physics tomographic inversion thermonuclear fusion

Laboratory of Nanoscale Magnetic Materials and Magnonics

Prof. Dirk Grundler

magnonics nanomagnetism cryo-Lorentz microscopy

Laboratory for Topology and Neuroscience

Prof. Kathryn Hess Bellwald

applied algebraic topology neuronal morphologies

Unsteady Flow Diagnostics Laboratory

Prof. Karen Mulleners

vortex dynamics particle tracking unsteady flows time-resolved PIV

Advanced Quantum Architecture Lab

Prof. Edoardo Charbon

high-speed optical sensing processing architectures cryogenic electronics LiDAR SPAD

Laboratory of Nanostructures at Surfaces

Prof. Harald Brune

Realistic Graphics Lab

Prof. Wenzel Jakob

Max Planck-EPFL Nanolab

Prof. Magalí Lingenfelder

Signal Processing Laboratory 5

Prof. Jean-Philippe Thiran

ML tools ML theory image analysis image reconstruction ultrasound imaging diffusion MRI

Laboratory of Nanoscale Biology

Prof. Aleksandra Radenovic

label-free imaging smart microscopy super-resolution microscopy mesoscopic imaging optical projection tomography quantitative phase imaging nanofluidics AFM EM SMLM

Laboratory of the Physics of Biological Systems

Prof. Sahand Rahi

ML tools 3D brain imaging systems biology yeast segmentation

Laboratory of Molecular Nanodynamics

Prof. Ulrich Lorenz

cryo-EM time-resolved EM ultrafast TEM revitrification electron pulses

Laboratory of Semiconductor Materials

Prof. Anna Fontcuberta

semiconductor materials nanowires cathodoluminescence imaging SEM TEM

Ecological Engineering Laboratory

Prof. Andrew Barry